Detailed information of SNP:
|
SNP ID:
sf0217131909(Gbrowse)
Chromosome: chr02 Position: 17131909 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 54.55% | 45.45% |
| All Indica | 787 | 26.18% | 73.82% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 66 | 74.24% | 25.76% |
| Indica I | 369 | 29.81% | 70.19% |
| Indica II | 213 | 35.68% | 64.32% |
| Indica Intermediate | 205 | 9.76% | 90.24% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217131909 | G->A | LOC_Os02g28960(LOC_Os02g28960.1) | Synonymous |