Detailed information of SNP:
|
SNP ID:
sf0217138974(Gbrowse)
Chromosome: chr02 Position: 17138974 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 52.12% | 47.88% |
| All Indica | 799 | 23.03% | 76.97% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 375 | 27.47% | 72.53% |
| Indica II | 213 | 32.39% | 67.61% |
| Indica Intermediate | 211 | 5.69% | 94.31% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217138974 | C->T | INTERGENIC | None |