Detailed information of SNP:
|
SNP ID:
sf0217138990(Gbrowse)
Chromosome: chr02 Position: 17138990 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 52.15% | 47.85% |
| All Indica | 799 | 23.40% | 76.60% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 375 | 28.27% | 71.73% |
| Indica II | 213 | 31.92% | 68.08% |
| Indica Intermediate | 211 | 6.16% | 93.84% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217138990 | C->T | INTERGENIC | None |