Detailed information of SNP:
|
SNP ID:
sf0217140329(Gbrowse)
Chromosome: chr02 Position: 17140329 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 52.75% | 47.25% |
| All Indica | 799 | 26.91% | 73.09% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 66 | 28.79% | 71.21% |
| Indica I | 375 | 34.13% | 65.87% |
| Indica II | 213 | 15.49% | 84.51% |
| Indica Intermediate | 211 | 25.59% | 74.41% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217140329 | T->C | INTERGENIC | None |