Detailed information of SNP:
|
SNP ID:
sf0217149760(Gbrowse)
Chromosome: chr02 Position: 17149760 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 67.54% | 32.46% |
| All Indica | 798 | 54.14% | 45.86% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 39.84% | 60.16% |
| Indica II | 213 | 62.44% | 37.56% |
| Indica Intermediate | 211 | 71.09% | 28.91% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217149760 | G->A | INTERGENIC | None |