Detailed information of SNP:
|
SNP ID:
sf0217149790(Gbrowse)
Chromosome: chr02 Position: 17149790 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1392 | 84.20% | 15.80% |
| All Indica | 776 | 78.99% | 21.01% |
| All Japonica | 495 | 99.80% | 0.20% |
| Aus | 66 | 28.79% | 71.21% |
| Indica I | 365 | 73.42% | 26.58% |
| Indica II | 206 | 72.33% | 27.67% |
| Indica Intermediate | 205 | 95.61% | 4.39% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217149790 | G->A | INTERGENIC | None |