Detailed information of SNP:
|
SNP ID:
sf0217151538(Gbrowse)
Chromosome: chr02 Position: 17151538 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 67.77% | 32.23% |
| All Indica | 798 | 98.62% | 1.38% |
| All Japonica | 497 | 12.27% | 87.73% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 13.73% | 86.27% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217151538 | G->A | LOC_Os02g28980(LOC_Os02g28980.1) | INTRON |