Detailed information of SNP:
|
SNP ID:
sf0217156560(Gbrowse)
Chromosome: chr02 Position: 17156560 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 51.16% | 48.84% |
| All Indica | 799 | 21.65% | 78.35% |
| All Japonica | 497 | 97.38% | 2.62% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 375 | 25.60% | 74.40% |
| Indica II | 213 | 31.46% | 68.54% |
| Indica Intermediate | 211 | 4.74% | 95.26% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217156560 | T->C | INTERGENIC | None |