Detailed information of SNP:
|
SNP ID:
sf0217169939(Gbrowse)
Chromosome: chr02 Position: 17169939 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 65.75% | 34.25% |
| All Indica | 799 | 53.07% | 46.93% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 38.67% | 61.33% |
| Indica II | 213 | 61.97% | 38.03% |
| Indica Intermediate | 211 | 69.67% | 30.33% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217169939 | A->G | LOC_Os02g29020(LOC_Os02g29020.1) | Synonymous |