Detailed information of SNP:
|
SNP ID:
sf0217173978(Gbrowse)
Chromosome: chr02 Position: 17173978 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 97.94% | 2.06% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 486 | 94.24% | 5.76% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 329 | 92.40% | 7.60% |
| Tropical Japonica | 89 | 98.88% | 1.12% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217173978 | G->A | LOC_Os02g29030(LOC_Os02g29030.1) | Non-Synonymous SNP |