Detailed information of SNP:
|
SNP ID:
sf0217175948(Gbrowse)
Chromosome: chr02 Position: 17175948 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 60.35% | 39.65% |
| All Indica | 792 | 92.42% | 7.58% |
| All Japonica | 497 | 2.62% | 97.38% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 370 | 94.05% | 5.95% |
| Indica II | 212 | 90.09% | 9.91% |
| Indica Intermediate | 210 | 91.90% | 8.10% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217175948 | G->A | LOC_Os02g29030(LOC_Os02g29030.1) | Synonymous |