Detailed information of SNP:
|
SNP ID:
sf0217180870(Gbrowse)
Chromosome: chr02 Position: 17180870 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 70.63% | 29.37% |
| All Indica | 794 | 48.87% | 51.13% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 61.76% | 38.24% |
| Indica II | 211 | 42.65% | 57.35% |
| Indica Intermediate | 209 | 32.06% | 67.94% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217180870 | C->A | LOC_Os02g29030(LOC_Os02g29030.1) | INTRON |