Detailed information of SNP:
|
SNP ID:
sf0217187901(Gbrowse)
Chromosome: chr02 Position: 17187901 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 66.29% | 33.71% |
| All Indica | 798 | 52.38% | 47.62% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 38.67% | 61.33% |
| Indica II | 212 | 60.85% | 39.15% |
| Indica Intermediate | 211 | 68.25% | 31.75% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217187901 | G->A | INTERGENIC | None |