Detailed information of SNP:
|
SNP ID:
sf0217192034(Gbrowse)
Chromosome: chr02 Position: 17192034 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 64.46% | 35.54% |
| All Indica | 799 | 98.75% | 1.25% |
| All Japonica | 497 | 2.82% | 97.18% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217192034 | G->A | LOC_Os02g29040(LOC_Os02g29040.1) | INTRON |
| sf0217192034 | G->A | LOC_Os02g29040(LOC_Os02g29040.2) | INTRON |