Detailed information of SNP:
|
SNP ID:
sf0217200048(Gbrowse)
Chromosome: chr02 Position: 17200048 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1390 | 69.57% | 30.43% |
| All Indica | 788 | 48.86% | 51.14% |
| All Japonica | 483 | 97.31% | 2.69% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 371 | 62.26% | 37.74% |
| Indica II | 207 | 42.03% | 57.97% |
| Indica Intermediate | 210 | 31.90% | 68.10% |
| Temperate Japonica | 330 | 99.39% | 0.61% |
| Tropical Japonica | 86 | 96.51% | 3.49% |
| Japonica Intermediate | 67 | 88.06% | 11.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217200048 | C->T | INTERGENIC | None |