Detailed information of SNP:
|
SNP ID:
sf0217205343(Gbrowse)
Chromosome: chr02 Position: 17205343 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 66.74% | 33.26% |
| All Indica | 796 | 53.14% | 46.86% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 39.57% | 60.43% |
| Indica II | 212 | 61.79% | 38.21% |
| Indica Intermediate | 210 | 68.57% | 31.43% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217205343 | T->C | LOC_Os02g29050(LOC_Os02g29050.1) | INTRON |