Detailed information of SNP:
|
SNP ID:
sf0217205684(Gbrowse)
Chromosome: chr02 Position: 17205684 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 67.00% | 33.00% |
| All Indica | 795 | 53.33% | 46.67% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 374 | 39.57% | 60.43% |
| Indica II | 211 | 62.09% | 37.91% |
| Indica Intermediate | 210 | 69.05% | 30.95% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217205684 | A->G | LOC_Os02g29050(LOC_Os02g29050.1) | Non-Synonymous SNP |