Detailed information of SNP:
|
SNP ID:
sf0217208766(Gbrowse)
Chromosome: chr02 Position: 17208766 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 55.12% | 44.88% |
| All Indica | 797 | 28.73% | 71.27% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 373 | 36.19% | 63.81% |
| Indica II | 213 | 15.96% | 84.04% |
| Indica Intermediate | 211 | 28.44% | 71.56% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217208766 | G->A | LOC_Os02g29060(LOC_Os02g29060.1) | Non-Synonymous SNP |