Detailed information of SNP:
|
SNP ID:
sf0217208937(Gbrowse)
Chromosome: chr02 Position: 17208937 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 67.37% | 32.63% |
| All Indica | 799 | 53.94% | 46.06% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 40.00% | 60.00% |
| Indica II | 213 | 63.38% | 36.62% |
| Indica Intermediate | 211 | 69.19% | 30.81% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217208937 | T->A | INTERGENIC | None |