Detailed information of SNP:
|
SNP ID:
sf0217226629(Gbrowse)
Chromosome: chr02 Position: 17226629 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 60.47% | 39.53% |
| All Indica | 799 | 92.74% | 7.26% |
| All Japonica | 497 | 2.01% | 97.99% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 92.53% | 7.47% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217226629 | T->C | LOC_Os02g29100(LOC_Os02g29100.1) | INTRON |