Detailed information of SNP:
|
SNP ID:
sf0217227061(Gbrowse)
Chromosome: chr02 Position: 17227061 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 66.64% | 33.36% |
| All Indica | 798 | 52.88% | 47.12% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 38.93% | 61.07% |
| Indica II | 212 | 63.21% | 36.79% |
| Indica Intermediate | 211 | 67.30% | 32.70% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217227061 | A->G | LOC_Os02g29100(LOC_Os02g29100.1) | INTRON |