Detailed information of SNP:
|
SNP ID:
sf0217236904(Gbrowse)
Chromosome: chr02 Position: 17236904 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 86.28% | 13.72% |
| All Indica | 780 | 79.74% | 20.26% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 66 | 71.21% | 28.79% |
| Indica I | 364 | 73.08% | 26.92% |
| Indica II | 211 | 91.94% | 8.06% |
| Indica Intermediate | 205 | 79.02% | 20.98% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217236904 | G->A | INTERGENIC | None |