Detailed information of SNP:
|
SNP ID:
sf0217240581(Gbrowse)
Chromosome: chr02 Position: 17240581 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 68.45% | 31.55% |
| All Indica | 797 | 47.43% | 52.57% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 60.16% | 39.84% |
| Indica II | 213 | 40.38% | 59.62% |
| Indica Intermediate | 210 | 31.90% | 68.10% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217240581 | C->T | LOC_Os02g29130(LOC_Os02g29130.2) | INTRON |
| sf0217240581 | C->T | LOC_Os02g29130(LOC_Os02g29130.1) | INTRON |