Detailed information of SNP:
|
SNP ID:
sf0217249082(Gbrowse)
Chromosome: chr02 Position: 17249082 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 67.87% | 32.13% |
| All Indica | 796 | 54.27% | 45.73% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 372 | 40.05% | 59.95% |
| Indica II | 213 | 64.32% | 35.68% |
| Indica Intermediate | 211 | 69.19% | 30.81% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217249082 | G->T | INTERGENIC | None |