Detailed information of SNP:
|
SNP ID:
sf0217250472(Gbrowse)
Chromosome: chr02 Position: 17250472 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1315 | 94.07% | 5.93% |
| All Indica | 725 | 92.28% | 7.72% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 44 | 59.09% | 40.91% |
| Indica I | 322 | 93.48% | 6.52% |
| Indica II | 196 | 83.67% | 16.33% |
| Indica Intermediate | 207 | 98.55% | 1.45% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 37 | 91.89% | 8.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217250472 | G->A | INTERGENIC | None |