Detailed information of SNP:
|
SNP ID:
sf0217251395(Gbrowse)
Chromosome: chr02 Position: 17251395 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 69.56% | 30.44% |
| All Indica | 796 | 47.36% | 52.64% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 59.79% | 40.21% |
| Indica II | 213 | 40.85% | 59.15% |
| Indica Intermediate | 210 | 31.90% | 68.10% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217251395 | T->C | INTERGENIC | None |