Detailed information of SNP:
|
SNP ID:
sf0217252659(Gbrowse)
Chromosome: chr02 Position: 17252659 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 83.76% | 16.24% |
| All Indica | 797 | 80.55% | 19.45% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 373 | 75.07% | 24.93% |
| Indica II | 213 | 74.65% | 25.35% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217252659 | A->T | LOC_Os02g29140(LOC_Os02g29140.1) | INTRON |