Detailed information of SNP:
|
SNP ID:
sf0217263872(Gbrowse)
Chromosome: chr02 Position: 17263872 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 85.62% | 14.38% |
| All Indica | 792 | 81.44% | 18.56% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 371 | 76.55% | 23.45% |
| Indica II | 210 | 75.24% | 24.76% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217263872 | G->A | INTERGENIC | None |