Detailed information of SNP:
|
SNP ID:
sf0217279702(Gbrowse)
Chromosome: chr02 Position: 17279702 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1183 | 72.95% | 27.05% |
| All Indica | 597 | 59.30% | 40.70% |
| All Japonica | 493 | 99.39% | 0.61% |
| Aus | 47 | 0.00% | 100.00% |
| Indica I | 251 | 53.39% | 46.61% |
| Indica II | 191 | 58.12% | 41.88% |
| Indica Intermediate | 155 | 70.32% | 29.68% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 91 | 98.90% | 1.10% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 32 | 56.25% | 43.75% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217279702 | C->G | LOC_Os02g29160(LOC_Os02g29160.1) | INTRON |