Detailed information of SNP:
|
SNP ID:
sf0217287035(Gbrowse)
Chromosome: chr02 Position: 17287035 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1360 | 86.40% | 13.60% |
| All Indica | 753 | 80.08% | 19.92% |
| All Japonica | 494 | 99.60% | 0.40% |
| Aus | 57 | 82.46% | 17.54% |
| Indica I | 355 | 70.42% | 29.58% |
| Indica II | 206 | 95.15% | 4.85% |
| Indica Intermediate | 192 | 81.77% | 18.23% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217287035 | A->G | INTERGENIC | None |