Detailed information of SNP:
|
SNP ID:
sf0217310783(Gbrowse)
Chromosome: chr02 Position: 17310783 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 58.56% | 41.44% |
| All Indica | 799 | 36.92% | 63.08% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 375 | 39.73% | 60.27% |
| Indica II | 213 | 25.35% | 74.65% |
| Indica Intermediate | 211 | 43.60% | 56.40% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217310783 | C->T | INTERGENIC | None |