Detailed information of SNP:
|
SNP ID:
sf0217313378(Gbrowse)
Chromosome: chr02 Position: 17313378 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 59.62% | 40.38% |
| All Indica | 799 | 38.42% | 61.58% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 375 | 40.00% | 60.00% |
| Indica II | 213 | 29.58% | 70.42% |
| Indica Intermediate | 211 | 44.55% | 55.45% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217313378 | C->A | INTERGENIC | None |