Detailed information of SNP:
|
SNP ID:
sf0217314482(Gbrowse)
Chromosome: chr02 Position: 17314482 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1387 | 57.53% | 42.47% |
| All Indica | 799 | 37.55% | 62.45% |
| All Japonica | 466 | 97.42% | 2.58% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 375 | 40.00% | 60.00% |
| Indica II | 213 | 27.70% | 72.30% |
| Indica Intermediate | 211 | 43.13% | 56.87% |
| Temperate Japonica | 312 | 97.12% | 2.88% |
| Tropical Japonica | 91 | 100.00% | 0.00% |
| Japonica Intermediate | 63 | 95.24% | 4.76% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217314482 | G->A | INTERGENIC | None |