Detailed information of SNP:
|
SNP ID:
sf0217315269(Gbrowse)
Chromosome: chr02 Position: 17315269 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1325 | 77.06% | 22.94% |
| All Indica | 788 | 79.82% | 20.18% |
| All Japonica | 418 | 79.19% | 20.81% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 374 | 76.47% | 23.53% |
| Indica II | 206 | 68.93% | 31.07% |
| Indica Intermediate | 208 | 96.63% | 3.37% |
| Temperate Japonica | 288 | 98.61% | 1.39% |
| Tropical Japonica | 75 | 14.67% | 85.33% |
| Japonica Intermediate | 55 | 65.45% | 34.55% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 38 | 71.05% | 28.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217315269 | G->A | INTERGENIC | None |