Detailed information of SNP:
|
SNP ID:
sf0217316638(Gbrowse)
Chromosome: chr02 Position: 17316638 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1390 | 88.06% | 11.94% |
| All Indica | 774 | 81.91% | 18.09% |
| All Japonica | 495 | 99.80% | 0.20% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 362 | 73.76% | 26.24% |
| Indica II | 211 | 94.31% | 5.69% |
| Indica Intermediate | 201 | 83.58% | 16.42% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217316638 | T->A | INTERGENIC | None |