Detailed information of SNP:
|
SNP ID:
sf0217317185(Gbrowse)
Chromosome: chr02 Position: 17317185 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 78.08% | 21.92% |
| All Indica | 799 | 65.58% | 34.42% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 375 | 61.87% | 38.13% |
| Indica II | 213 | 79.34% | 20.66% |
| Indica Intermediate | 211 | 58.29% | 41.71% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217317185 | C->T | INTERGENIC | None |