Detailed information of SNP:
|
SNP ID:
sf0217318500(Gbrowse)
Chromosome: chr02 Position: 17318500 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 58.56% | 41.44% |
| All Indica | 799 | 37.05% | 62.95% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 375 | 39.73% | 60.27% |
| Indica II | 213 | 26.29% | 73.71% |
| Indica Intermediate | 211 | 43.13% | 56.87% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217318500 | G->A | INTERGENIC | None |