Detailed information of SNP:
|
SNP ID:
sf0217321920(Gbrowse)
Chromosome: chr02 Position: 17321920 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 60.01% | 39.99% |
| All Indica | 798 | 37.22% | 62.78% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 375 | 40.00% | 60.00% |
| Indica II | 212 | 26.42% | 73.58% |
| Indica Intermediate | 211 | 43.13% | 56.87% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217321920 | C->A | LOC_Os02g29210(LOC_Os02g29210.1) | UTR_3_PRIME |
| sf0217321920 | C->A | LOC_Os02g29210(LOC_Os02g29210.4) | UTR_3_PRIME |
| sf0217321920 | C->A | LOC_Os02g29210(LOC_Os02g29210.3) | UTR_3_PRIME |
| sf0217321920 | C->A | LOC_Os02g29210(LOC_Os02g29210.2) | UTR_3_PRIME |