Detailed information of SNP:
|
SNP ID:
sf0217322261(Gbrowse)
Chromosome: chr02 Position: 17322261 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 62.55% | 37.45% |
| All Indica | 798 | 96.24% | 3.76% |
| All Japonica | 497 | 2.01% | 97.99% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 96.79% | 3.21% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217322261 | T->A | LOC_Os02g29210(LOC_Os02g29210.1) | INTRON |
| sf0217322261 | T->A | LOC_Os02g29210(LOC_Os02g29210.4) | INTRON |
| sf0217322261 | T->A | LOC_Os02g29210(LOC_Os02g29210.3) | INTRON |
| sf0217322261 | T->A | LOC_Os02g29210(LOC_Os02g29210.2) | INTRON |