Detailed information of SNP:
|
SNP ID:
sf0217331339(Gbrowse)
Chromosome: chr02 Position: 17331339 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 77.36% | 22.64% |
| All Indica | 799 | 64.46% | 35.54% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 375 | 60.27% | 39.73% |
| Indica II | 213 | 78.87% | 21.13% |
| Indica Intermediate | 211 | 57.35% | 42.65% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217331339 | C->T | INTERGENIC | None |