Detailed information of SNP:
|
SNP ID:
sf0217339248(Gbrowse)
Chromosome: chr02 Position: 17339248 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 77.68% | 22.32% |
| All Indica | 798 | 64.91% | 35.09% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 375 | 60.27% | 39.73% |
| Indica II | 212 | 78.77% | 21.23% |
| Indica Intermediate | 211 | 59.24% | 40.76% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217339248 | C->T | INTERGENIC | None |