Detailed information of SNP:
|
SNP ID:
sf0217344010(Gbrowse)
Chromosome: chr02 Position: 17344010 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 82.09% | 17.91% |
| All Indica | 798 | 72.31% | 27.69% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 374 | 64.17% | 35.83% |
| Indica II | 213 | 84.51% | 15.49% |
| Indica Intermediate | 211 | 74.41% | 25.59% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217344010 | G->A | INTERGENIC | None |