Detailed information of SNP:
|
SNP ID:
sf0217359953(Gbrowse)
Chromosome: chr02 Position: 17359953 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 81.64% | 18.36% |
| All Indica | 796 | 73.62% | 26.38% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 373 | 65.95% | 34.05% |
| Indica II | 213 | 85.45% | 14.55% |
| Indica Intermediate | 210 | 75.24% | 24.76% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217359953 | C->T | INTERGENIC | None |