Detailed information of SNP:
|
SNP ID:
sf0217360985(Gbrowse)
Chromosome: chr02 Position: 17360985 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 81.25% | 18.75% |
| All Indica | 799 | 72.84% | 27.16% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 375 | 65.07% | 34.93% |
| Indica II | 213 | 85.45% | 14.55% |
| Indica Intermediate | 211 | 73.93% | 26.07% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217360985 | G->A | INTERGENIC | None |