Detailed information of SNP:
|
SNP ID:
sf0217364690(Gbrowse)
Chromosome: chr02 Position: 17364690 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1387 | 92.43% | 7.57% |
| All Indica | 772 | 87.31% | 12.69% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 92.19% | 7.81% |
| Indica I | 360 | 76.94% | 23.06% |
| Indica II | 203 | 94.58% | 5.42% |
| Indica Intermediate | 209 | 98.09% | 1.91% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217364690 | C->T | INTERGENIC | None |