Detailed information of SNP:
|
SNP ID:
sf0217372035(Gbrowse)
Chromosome: chr02 Position: 17372035 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1391 | 51.91% | 48.09% |
| All Indica | 776 | 23.71% | 76.29% |
| All Japonica | 496 | 98.79% | 1.21% |
| Aus | 64 | 26.56% | 73.44% |
| Indica I | 360 | 28.33% | 71.67% |
| Indica II | 207 | 22.22% | 77.78% |
| Indica Intermediate | 209 | 17.22% | 82.78% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 38.46% | 61.54% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217372035 | G->T | INTERGENIC | None |