Detailed information of SNP:
|
SNP ID:
sf0217381741(Gbrowse)
Chromosome: chr02 Position: 17381741 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1397 | 56.19% | 43.81% |
| All Indica | 784 | 87.63% | 12.37% |
| All Japonica | 496 | 1.01% | 98.99% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 366 | 87.43% | 12.57% |
| Indica II | 209 | 86.12% | 13.88% |
| Indica Intermediate | 209 | 89.47% | 10.53% |
| Temperate Japonica | 334 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 11 | 72.73% | 27.27% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217381741 | C->T | LOC_Os02g29260(LOC_Os02g29260.1) | Synonymous |