Detailed information of SNP:
|
SNP ID:
sf0217382194(Gbrowse)
Chromosome: chr02 Position: 17382194 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1323 | 96.98% | 3.02% |
| All Indica | 711 | 94.51% | 5.49% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 344 | 94.19% | 5.81% |
| Indica II | 183 | 95.63% | 4.37% |
| Indica Intermediate | 184 | 94.02% | 5.98% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 38 | 97.37% | 2.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217382194 | C->G | LOC_Os02g29260(LOC_Os02g29260.1) | Non-Synonymous SNP |