Detailed information of SNP:
|
SNP ID:
sf0217385509(Gbrowse)
Chromosome: chr02 Position: 17385509 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 60.57% | 39.43% |
| All Indica | 796 | 94.60% | 5.40% |
| All Japonica | 496 | 1.41% | 98.59% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 96.26% | 3.74% |
| Indica II | 212 | 91.04% | 8.96% |
| Indica Intermediate | 210 | 95.24% | 4.76% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 93 | 3.23% | 96.77% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217385509 | T->C | LOC_Os02g29270(LOC_Os02g29270.1) | Synonymous |