Detailed information of SNP:
|
SNP ID:
sf0217406070(Gbrowse)
Chromosome: chr02 Position: 17406070 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1387 | 87.09% | 12.91% |
| All Indica | 772 | 78.37% | 21.63% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 62 | 93.55% | 6.45% |
| Indica I | 360 | 70.56% | 29.44% |
| Indica II | 211 | 88.15% | 11.85% |
| Indica Intermediate | 201 | 82.09% | 17.91% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217406070 | G->C | INTERGENIC | None |